Tool | Link | Main Institution | Nation | Architecture | Tags | Pros | Cons |
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Epidemiology | | | | | | | |
JHU COVID-19 Dashboard | http://coronavirus.jhu.edu/map.html | Johns Hopkins University | USA | Python | Dashboard, Interactive Map, Trend Assessment, Worldwide | Frequently Updated, Quick Assessment, Worldwide Analysis | |
DSCovR | http://msph.shinyapps.io/dscovr_dashboard | Columbia University | USA | Shiny/R | Dashboard, Interactive Map, Trend Assessment | Comparative Region Analysis, Demographics Included | Slow to load, Focused on USA |
WHO Dashboard | http://covid19.who.int | WHO | Worldwide | JavaScript | Dashboard, Interactive Map, Worldwide | Comparative Region Analysis, Easy to Use, Frequently Updated, Quick Assessment, Worldwide Analysis | |
Worldometers | http://worldometers.info/coronavirus | Worldometers.info | USA | JavaScript | Spreadsheet, Worldwide | Easy to Use, Frequently Updated, Quick Assessment, Worldwide Analysis | |
COVID-19 Scenarios | http://covid19-scenarios.org | University of Basel | Switzerland | JavaScript | Interactive Simulator, Worldwide | Demographics Included, High Number of Parameters | Non-trivial to tailor the simulation for specific regions |
Harvard COVID-19 Simulator | http://covid19sim.org | Harvard Medical School | USA | R | Interactive Simulator | Frequently Updated | Focused on USA |
CovidSIM | http://covidsim.eu | ExploSYS GmbH | Germany | JavaScript | Interactive Simulator | High Number of Parameters | Non-trivial to tailor the simulation for specific regions |
COVID-19 Trajectory viewer | http://apps.health-atlas.de/covid-19-grapher/ | University of Leipzig | Germany | Shiny/R | Interactive Simulator | Comparative Region Analysis | |
COVID-19 Exit Strategies | http://scienceversuscorona.shinyapps.io/covid-exit/ | Science versus Corona initiative | Worldwide | Shiny/R | Interactive Simulator | Comparison of Several Exit Strategies | Tunable Parameters are Few |
Greifswald COVID-19 Simulator | http://kaderali.org:3838/covidsim | University of Greifswald | Germany | Shiny/R | Interactive Simulator | Predict Effect of Social Contact Reduction | Focused on specific countries and German regions |
COVID19-Tracker | http://ubidi.shinyapps.io/covid19 | Bellvitge Biomedical Research Institute | Spain | Shiny/R | Case Number Visualizer and Predictor | Frequently Updated | Focused on Spain |
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Genomics | | | | | | | |
GISAID | http://gisaid.org | GISAID | Worldwide | CMS TYPO3 | Data Repository, Worldwide | Database Fully Downloadable, Frequently Updated, Precomputed Multiple Sequence Alignment | |
Nextstrain | http://nextstrain.org/ncov/global | University of Basel | Switzerland | Python | Dashboard, Nucleotide Mutation Analysis, Phylogenesis, Worldwide | Frequently Updated, Simulation of Mutation Spread over Time, Worldwide | Difficult to zoom into specific regions of the interactive phylogenetic tree |
Covidex | http://cacciabue.shinyapps.io/shiny2 | University of Luján | Argentina | Shiny/R | Phylogenetic Categorization | Allows User-provided Data, Intuitive Tutorial | Works exclusively with User-provided Data |
Coronapp | http://giorgilab.dyndns.org/coronapp | University of Bologna | Italy | Shiny/R | Amino Acid Mutation Analysis, Nucleotide Mutation Analysis, Frequency of Mutations over Time | Allows User-provided Data, Nucleotide and Protein Mutations, Worldwide | Slow to load |
COVID-19 Genotyping Tool | http://covidgenotyper.app | University of Toronto | Canada | Shiny/R | Phylogenetic Categorization via 2D clustering | Allows User-provided Data | Analysis is very slow, Maximum number of sequences is only 10 |
Pangolin | http://pangolin.cog-uk.io | Centre for Genomic Pathogen Surveillance | United Kingdom | Python | Phylogenetic Categorization, Lineage Assigner | Allows User-provided Data, Intuitive Assignment of Lineage | Analysis is slow |
SARS-CoV-2 Alignment Screen | http://macman123.shinyapps.io/ugi-scov2-alignment-screen | University College London | United Kingdom | Shiny/R | Nucleotide Mutation Analysis | Mutation Analysis can be Focused on specific Genomic Regions or Genes | Not frequently updated |
CoV-GLUE | http://cov-glue.cvr.gla.ac.uk | University of Glasgow | United Kingdom | JavaScript | Amino Acid Mutation Analysis, Nucleotide Mutation Analysis, Spreadsheet | Mutation Analysis can be Focused on specific Genomic Regions or Genes, Mutations Categorized as Replacements/Insertions/Deletions | |
Coronavirus3D | http://coronavirus3d.org | University of California Riverside | USA | JavaScript | Amino Acid Mutation Analysis, 3D Structure | Allows to project mutations on viral protein structures from PDB, Frequently Updated | |
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Interactomics | | | | | | | |
CoVex | http://exbio.wzw.tum.de/covex/explorer | Technical University of Munich | Germany | JavaScript | Interactome Visualizer | Allows to identify Known Drugs for selected Target Proteins | |
VirHostNet 2.0 | http://virhostnet.prabi.fr | University of Lyon | France | Cytoscape web | Interactome Visualizer | Prediction of novel interactions on user-provided protein sequences | Analysis is slow |
P-HIPSTer | http://phipster.org | Columbia University | USA | JavaScript | Interaction List | Prediction of novel interactions using sequence- and structure-based machine learning | Not focused on SARS-CoV-2 |
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Pharmacology | | | | | | | |
COVID-19 Gene/Drug Set Library | http://amp.pharm.mssm.edu/covid19 | Icahn School of Medicine Mount Sinai | USA | JavaScript | Curated Lists of Genes and Drugs | Lists can be Searched, New Sets can be Proposed | No link with external databases |
canSAR | http://corona.cansar.icr.ac.uk | CRUK Cancer Therapeutics Unit | United Kingdom | JavaScript | Database of Clinical Trials, Drugs and Druggable Targets | Intuitive Visualization of Druggable Interactome, Drug Prediction | |
CORDITE | http://cordite.mathematik.uni-marburg.de | University of Marburg | Germany | JavaScript | Database of Clinical Trials, Drugs and Druggable Targets | Quick Search | Not Frequently Updated |
COVID-19 Disease Map | http://covid19map.lcsb.uni.lu/Minerva | University of Luxemburg | Luxemburg | JavaScript | Database of Drugs and Pathways | Search for relevant interactions between viral proteins and human pathways | Interactome Labels are hard to read, Not Frequently Updated, No Examples provided, Not focused on SARS-CoV-2 |
CoV-Hipathia | http://hipathia.babelomics.org/covid19 | Foundation for Progress and Health | Spain | Web Components | Analysis of Druggable Pathways affected by Gene Expression Changes | Allows User-provided Data | Analysis is slow |
Chemical Checker | http://sbnb.irbbarcelona.org/covid19 | Institute for Research in Biomedicine | Spain | JavaScript | Database of Drugs | Drugs Ranked by Evidence Quality and Quantity, Frequently Updated | |
Clinical Trials | http://clinicaltrials.gov/ct2/who_table | WHO/NIH | United States | JavaScript | Database of Clinical Trials | Frequently Updated, Fully Comprehensive | Not categorized by Drugs |